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jMorp User Guide 0.1 目次 1. Overview of jMorp 2. How to use jMorp website 3. Details of datasets included in jMorp 3.1. JG2.1.0 3.2. 38KJPN-SNV/INDEL 3.3. 38KJPN-HLA 3.4. 54KJPN-SNV/INDEL 3.5. 54KJPN-HLA (v20230626) 3.6. 54KJPN-HLA (v20230828) 3.7. 54KJPN-STR 3.8. JCNVv1 3.9. 8.3KJPN-SV 3.10. JSV1 3.11. ToMMo whole blood transcriptome (v20230828) 3.12. ToMMo ISO-Seq 3.13. IMM 3cell analysis 3.14. IMM cord blood 3.15. Proteome 3.16. Metabolome 2022 3.17. Metabolome 2023 3.18. MRI (v20240325) 3.19. PGx 3.20. Metagenome 16S-v4 3.21. Metagenome 16S-v3/v4 3.22. Metagenome shotgun 3.23. Data other than TMM analysis data References Contact jMorp User Guide 3. Details of datasets included in jMorp 3.22. Metagenome shotgun 3.22. Metagenome shotgun Dataset categoryPhenome SummaryMicrobiome analysis data of fecal samples (shotgun analysis) Samples analyzedfecal sample Number of samples315 samples Analysis platformNovaSeq 6000 (Illumina) item ID ruleEach microbe in the Metagenome shotgun 2022 dataset is assigned an ID such as TTCx_1234. The leading TT stands for ToMMo Taxonomy. The C in the ID’s third character indicates that it belongs to the Metagenome shotgun dataset. (This character is used to distinguish it from the ID for the Metagenome 16S-v4 and Metagenome 16S-v3/v4 datasets.) The fourth character indicates the hierarchical level in the phylogenetic tree. (TTCP_xxxx = Phylum, TTCC_xxxx = Class, TTCO_xxxx = Order, TTCF_xxxx = Family, TTCG_xxxx = Genus, TTCS_xxxx = Species) Related pages on jMorp website Metagenome page Previous Next &＃169; Copyright 2024, jMorp developers. Built with Sphinx using a theme provided by Read the Docs.